WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41A3.1b.1 Sequence Name  C41A3.1b.1
Length (nt)  13798   Chromosome Location  X: 5413810-5441961
Chromosome . Primary Identifier  X Chromosome Location . Start  5413810
Chromosome Location . End  5441961 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41A3.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016558 pks-1 C41A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41A3.1b C41A3.1b 13755   X: 5413810-5413895

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1b.1 5413810 5441961 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233698   86   X: 5413810-5413895 Caenorhabditis elegans
Exon233700   121   X: 5414257-5414377 Caenorhabditis elegans
Exon233703   215   X: 5414426-5414640 Caenorhabditis elegans
Exon233705   153   X: 5414996-5415148 Caenorhabditis elegans
Exon233707   238   X: 5415193-5415430 Caenorhabditis elegans
Exon233709   149   X: 5415830-5415978 Caenorhabditis elegans
Exon233711   2036   X: 5416022-5418057 Caenorhabditis elegans
Exon233715   294   X: 5418102-5418395 Caenorhabditis elegans
Exon233717   89   X: 5418440-5418528 Caenorhabditis elegans
Exon233719   122   X: 5418579-5418700 Caenorhabditis elegans
Exon233721   342   X: 5419026-5419367 Caenorhabditis elegans
Exon233723   1393   X: 5419414-5420806 Caenorhabditis elegans
Exon233725   574   X: 5421268-5421841 Caenorhabditis elegans
Exon233727   312   X: 5421911-5422222 Caenorhabditis elegans
Exon233729   132   X: 5422965-5423096 Caenorhabditis elegans
Exon233731   1982   X: 5423143-5425124 Caenorhabditis elegans
Exon233733   165   X: 5425574-5425738 Caenorhabditis elegans
Exon233735   142   X: 5425785-5425926 Caenorhabditis elegans
Exon233737   1211   X: 5425976-5427186 Caenorhabditis elegans
Exon233739   216   X: 5427666-5427881 Caenorhabditis elegans
Exon233741   1504   X: 5427937-5429440 Caenorhabditis elegans
Exon233743   202   X: 5429485-5429686 Caenorhabditis elegans
Exon233744   1060   X: 5429734-5430793 Caenorhabditis elegans
Exon233747   69   X: 5440298-5440366 Caenorhabditis elegans
Exon233749   246   X: 5440418-5440663 Caenorhabditis elegans
Exon233751   174   X: 5440708-5440881 Caenorhabditis elegans
Exon233753   186   X: 5441194-5441379 Caenorhabditis elegans
Exon233755   48   X: 5441425-5441472 Caenorhabditis elegans
Exon233757   110   X: 5441521-5441630 Caenorhabditis elegans
Exon233759   85   X: 5441678-5441762 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1b.1 5413810 5441961 1

1 Sequence

Length
13798

1 Sequence Ontology Term

Identifier Name Description
transcript