WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C25F6.2.1 Sequence Name  C25F6.2.1
Length (nt)  3780   Chromosome Location  X: 5479700-5484941
Chromosome . Primary Identifier  X Chromosome Location . Start  5479700
Chromosome Location . End  5484941 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C25F6.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001006 dlg-1 C25F6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C25F6.2 C25F6.2 2904   X: 5479761-5479782

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C25F6.2.1 5479700 5484941 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233839   83   X: 5479700-5479782 Caenorhabditis elegans
Exon233842   317   X: 5480665-5480981 Caenorhabditis elegans
Exon233843   219   X: 5481058-5481276 Caenorhabditis elegans
Exon233844   97   X: 5481324-5481420 Caenorhabditis elegans
Exon233845   91   X: 5481468-5481558 Caenorhabditis elegans
Exon233846   352   X: 5481612-5481963 Caenorhabditis elegans
Exon233847   307   X: 5482020-5482326 Caenorhabditis elegans
Exon233848   469   X: 5482385-5482853 Caenorhabditis elegans
Exon233849   524   X: 5482912-5483435 Caenorhabditis elegans
Exon233850   283   X: 5483519-5483801 Caenorhabditis elegans
Exon233851   122   X: 5483849-5483970 Caenorhabditis elegans
Exon233852   916   X: 5484026-5484941 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C25F6.2.1 5479700 5484941 1

1 Sequence

Length
3780

1 Sequence Ontology Term

Identifier Name Description
transcript