WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3c.1 Sequence Name  C54G7.3c.1
Length (nt)  5265   Chromosome Location  X: 5525342-5538461
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5538461 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3c C54G7.3c 5265   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3c.1 5525342 5538461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233931   189   X: 5525342-5525530 Caenorhabditis elegans
Exon233939   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233947   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233955   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233963   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233971   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233979   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233987   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233995   147   X: 5527425-5527571 Caenorhabditis elegans
Exon234003   267   X: 5527615-5527881 Caenorhabditis elegans
Exon234011   82   X: 5527932-5528013 Caenorhabditis elegans
Exon234019   155   X: 5528059-5528213 Caenorhabditis elegans
Exon234029   111   X: 5529270-5529380 Caenorhabditis elegans
Exon234038   308   X: 5529438-5529745 Caenorhabditis elegans
Exon234047   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234056   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234064   453   X: 5530326-5530778 Caenorhabditis elegans
Exon234074   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234083   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234092   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234102   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234111   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234120   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234128   144   X: 5536273-5536416 Caenorhabditis elegans
Exon234134   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234142   153   X: 5536780-5536932 Caenorhabditis elegans
Exon234148   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234157   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234166   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234175   112   X: 5538257-5538368 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3c.1 5525342 5538461 -1

1 Sequence

Length
5265

1 Sequence Ontology Term

Identifier Name Description
transcript