WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3g.1 Sequence Name  C54G7.3g.1
Length (nt)  4962   Chromosome Location  X: 5525342-5538461
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5538461 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3g C54G7.3g 4962   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3g.1 5525342 5538461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233935   189   X: 5525342-5525530 Caenorhabditis elegans
Exon233943   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233951   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233959   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233967   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233975   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233983   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233991   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233999   147   X: 5527425-5527571 Caenorhabditis elegans
Exon234007   267   X: 5527615-5527881 Caenorhabditis elegans
Exon234015   82   X: 5527932-5528013 Caenorhabditis elegans
Exon234023   155   X: 5528059-5528213 Caenorhabditis elegans
Exon234033   111   X: 5529270-5529380 Caenorhabditis elegans
Exon234042   308   X: 5529438-5529745 Caenorhabditis elegans
Exon234051   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234060   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234069   150   X: 5530629-5530778 Caenorhabditis elegans
Exon234078   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234087   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234096   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234106   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234115   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234124   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234130   144   X: 5536273-5536416 Caenorhabditis elegans
Exon234138   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234144   153   X: 5536780-5536932 Caenorhabditis elegans
Exon234152   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234161   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234170   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234179   112   X: 5538257-5538368 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3g.1 5525342 5538461 -1

1 Sequence

Length
4962

1 Sequence Ontology Term

Identifier Name Description
transcript