WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W01C8.4.2 Sequence Name  W01C8.4.2
Length (nt)  2015   Chromosome Location  X: 5680334-5686140
Chromosome . Primary Identifier  X Chromosome Location . Start  5680334
Chromosome Location . End  5686140 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W01C8.4.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020920 set-20 W01C8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W01C8.4 W01C8.4 1578   X: 5680561-5680689

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W01C8.4.2 5680334 5686140 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon234696   356   X: 5680334-5680689 Caenorhabditis elegans
Exon234698   196   X: 5680953-5681148 Caenorhabditis elegans
Exon234700   98   X: 5681209-5681306 Caenorhabditis elegans
Exon234702   194   X: 5681353-5681546 Caenorhabditis elegans
Exon234704   125   X: 5682108-5682232 Caenorhabditis elegans
Exon234706   41   X: 5682376-5682416 Caenorhabditis elegans
Exon234709   81   X: 5682464-5682544 Caenorhabditis elegans
Exon234711   157   X: 5682594-5682750 Caenorhabditis elegans
Exon234713   75   X: 5682798-5682872 Caenorhabditis elegans
Exon234715   151   X: 5683084-5683234 Caenorhabditis elegans
Exon234717   55   X: 5683282-5683336 Caenorhabditis elegans
Exon234719   126   X: 5684073-5684198 Caenorhabditis elegans
Exon234721   96   X: 5684299-5684394 Caenorhabditis elegans
Exon234723   61   X: 5684561-5684621 Caenorhabditis elegans
Exon234724   101   X: 5685864-5685964 Caenorhabditis elegans
Exon234725   102   X: 5686039-5686140 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W01C8.4.2 5680334 5686140 -1

1 Sequence

Length
2015

1 Sequence Ontology Term

Identifier Name Description
transcript