WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46G11.1a.1 Sequence Name  F46G11.1a.1
Length (nt)  2104   Chromosome Location  X: 5791703-5797332
Chromosome . Primary Identifier  X Chromosome Location . Start  5791703
Chromosome Location . End  5797332 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46G11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018514 twnk-1 F46G11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46G11.1a F46G11.1a 1788   X: 5791744-5791755

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1a.1 5791703 5797332 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235007   53   X: 5791703-5791755 Caenorhabditis elegans
Exon235008   98   X: 5791799-5791896 Caenorhabditis elegans
Exon235016   70   X: 5793996-5794065 Caenorhabditis elegans
Exon235020   281   X: 5794111-5794391 Caenorhabditis elegans
Exon235024   276   X: 5794438-5794713 Caenorhabditis elegans
Exon235028   73   X: 5794850-5794922 Caenorhabditis elegans
Exon235032   111   X: 5794971-5795081 Caenorhabditis elegans
Exon235036   135   X: 5795132-5795266 Caenorhabditis elegans
Exon235043   101   X: 5795323-5795423 Caenorhabditis elegans
Exon235044   54   X: 5795487-5795540 Caenorhabditis elegans
Exon235047   133   X: 5795929-5796061 Caenorhabditis elegans
Exon235051   126   X: 5796107-5796232 Caenorhabditis elegans
Exon235055   213   X: 5796694-5796906 Caenorhabditis elegans
Exon235060   380   X: 5796953-5797332 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1a.1 5791703 5797332 1

1 Sequence

Length
2104

1 Sequence Ontology Term

Identifier Name Description
transcript