WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E10.1.1 Sequence Name  F49E10.1.1
Length (nt)  2427   Chromosome Location  X: 5897338-5902157
Chromosome . Primary Identifier  X Chromosome Location . Start  5897338
Chromosome Location . End  5902157 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018639 tbc-16 F49E10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E10.1 F49E10.1 2178   X: 5897391-5897448

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E10.1.1 5897338 5902157 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235209   111   X: 5897338-5897448 Caenorhabditis elegans
Exon235210   86   X: 5897523-5897608 Caenorhabditis elegans
Exon235211   122   X: 5897660-5897781 Caenorhabditis elegans
Exon235212   43   X: 5897830-5897872 Caenorhabditis elegans
Exon235213   69   X: 5898242-5898310 Caenorhabditis elegans
Exon235214   93   X: 5898367-5898459 Caenorhabditis elegans
Exon235215   211   X: 5898502-5898712 Caenorhabditis elegans
Exon235216   189   X: 5898757-5898945 Caenorhabditis elegans
Exon235217   89   X: 5898991-5899079 Caenorhabditis elegans
Exon235218   87   X: 5899122-5899208 Caenorhabditis elegans
Exon235219   168   X: 5899258-5899425 Caenorhabditis elegans
Exon235220   281   X: 5900200-5900480 Caenorhabditis elegans
Exon235221   93   X: 5900526-5900618 Caenorhabditis elegans
Exon235222   259   X: 5900672-5900930 Caenorhabditis elegans
Exon235223   168   X: 5901492-5901659 Caenorhabditis elegans
Exon235224   126   X: 5901743-5901868 Caenorhabditis elegans
Exon235225   232   X: 5901926-5902157 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E10.1.1 5897338 5902157 1

1 Sequence

Length
2427

1 Sequence Ontology Term

Identifier Name Description
transcript