WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E10.2b.1 Sequence Name  F49E10.2b.1
Length (nt)  2943   Chromosome Location  X: 5890380-5894757
Chromosome . Primary Identifier  X Chromosome Location . Start  5890380
Chromosome Location . End  5894757 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E10.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018640 F49E10.2 F49E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E10.2b F49E10.2b 2529   X: 5890457-5890607

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.2b.1 5890380 5894757 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235238   228   X: 5890380-5890607 Caenorhabditis elegans
Exon235241   125   X: 5890664-5890788 Caenorhabditis elegans
Exon235243   252   X: 5890858-5891109 Caenorhabditis elegans
Exon235245   177   X: 5891155-5891331 Caenorhabditis elegans
Exon235248   290   X: 5891932-5892221 Caenorhabditis elegans
Exon235250   545   X: 5892272-5892816 Caenorhabditis elegans
Exon235252   88   X: 5892861-5892948 Caenorhabditis elegans
Exon235254   79   X: 5893005-5893083 Caenorhabditis elegans
Exon235256   322   X: 5893137-5893458 Caenorhabditis elegans
Exon235258   167   X: 5893506-5893672 Caenorhabditis elegans
Exon235259   173   X: 5893722-5893894 Caenorhabditis elegans
Exon235261   497   X: 5894261-5894757 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.2b.1 5890380 5894757 1

1 Sequence

Length
2943

1 Sequence Ontology Term

Identifier Name Description
transcript