WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09B8.7b.1 Sequence Name  C09B8.7b.1
Length (nt)  2304   Chromosome Location  X: 6044308-6048606
Chromosome . Primary Identifier  X Chromosome Location . Start  6044308
Chromosome Location . End  6048606 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09B8.7b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003911 pak-1 C09B8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09B8.7b C09B8.7b 1710   X: 6044894-6045052

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09B8.7b.1 6044308 6048606 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235585   745   X: 6044308-6045052 Caenorhabditis elegans
Exon235589   72   X: 6045210-6045281 Caenorhabditis elegans
Exon235592   123   X: 6045894-6046016 Caenorhabditis elegans
Exon235595   74   X: 6046071-6046144 Caenorhabditis elegans
Exon235598   568   X: 6046195-6046762 Caenorhabditis elegans
Exon235602   93   X: 6047029-6047121 Caenorhabditis elegans
Exon235604   206   X: 6047166-6047371 Caenorhabditis elegans
Exon235608   148   X: 6047429-6047576 Caenorhabditis elegans
Exon235611   107   X: 6048125-6048231 Caenorhabditis elegans
Exon235615   79   X: 6048280-6048358 Caenorhabditis elegans
Exon235616   89   X: 6048518-6048606 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09B8.7b.1 6044308 6048606 -1

1 Sequence

Length
2304

1 Sequence Ontology Term

Identifier Name Description
transcript