WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C15B12.5b.1 Sequence Name  C15B12.5b.1
Length (nt)  2405   Chromosome Location  X: 6479445-6484880
Chromosome . Primary Identifier  X Chromosome Location . Start  6479445
Chromosome Location . End  6484880 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C15B12.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001517 gar-1 C15B12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C15B12.5b C15B12.5b 2142   X: 6479638-6479814

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C15B12.5b.1 6479445 6484880 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon236832   370   X: 6479445-6479814 Caenorhabditis elegans
Exon236837   58   X: 6479865-6479922 Caenorhabditis elegans
Exon236845   138   X: 6479970-6480107 Caenorhabditis elegans
Exon236847   171   X: 6480246-6480416 Caenorhabditis elegans
Exon236851   137   X: 6480681-6480817 Caenorhabditis elegans
Exon236856   111   X: 6481752-6481862 Caenorhabditis elegans
Exon236861   211   X: 6481907-6482117 Caenorhabditis elegans
Exon236866   150   X: 6482168-6482317 Caenorhabditis elegans
Exon236871   74   X: 6482366-6482439 Caenorhabditis elegans
Exon236876   93   X: 6482805-6482897 Caenorhabditis elegans
Exon236879   93   X: 6483095-6483187 Caenorhabditis elegans
Exon236884   96   X: 6483244-6483339 Caenorhabditis elegans
Exon236889   112   X: 6483394-6483505 Caenorhabditis elegans
Exon236894   139   X: 6483553-6483691 Caenorhabditis elegans
Exon236899   117   X: 6483873-6483989 Caenorhabditis elegans
Exon236904   91   X: 6484036-6484126 Caenorhabditis elegans
Exon236909   102   X: 6484239-6484340 Caenorhabditis elegans
Exon236917   142   X: 6484739-6484880 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C15B12.5b.1 6479445 6484880 -1

1 Sequence

Length
2405

1 Sequence Ontology Term

Identifier Name Description
transcript