WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C15B12.5e.1 Sequence Name  C15B12.5e.1
Length (nt)  2040   Chromosome Location  X: 6479638-6484810
Chromosome . Primary Identifier  X Chromosome Location . Start  6479638
Chromosome Location . End  6484810 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C15B12.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001517 gar-1 C15B12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C15B12.5e C15B12.5e 2040   X: 6479638-6479814

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C15B12.5e.1 6479638 6484810 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon236835   177   X: 6479638-6479814 Caenorhabditis elegans
Exon236840   58   X: 6479865-6479922 Caenorhabditis elegans
Exon236843   129   X: 6479970-6480098 Caenorhabditis elegans
Exon236849   171   X: 6480246-6480416 Caenorhabditis elegans
Exon236854   137   X: 6480681-6480817 Caenorhabditis elegans
Exon236859   111   X: 6481752-6481862 Caenorhabditis elegans
Exon236864   211   X: 6481907-6482117 Caenorhabditis elegans
Exon236869   150   X: 6482168-6482317 Caenorhabditis elegans
Exon236874   74   X: 6482366-6482439 Caenorhabditis elegans
Exon236882   93   X: 6483095-6483187 Caenorhabditis elegans
Exon236887   96   X: 6483244-6483339 Caenorhabditis elegans
Exon236892   112   X: 6483394-6483505 Caenorhabditis elegans
Exon236897   139   X: 6483553-6483691 Caenorhabditis elegans
Exon236902   117   X: 6483873-6483989 Caenorhabditis elegans
Exon236907   91   X: 6484036-6484126 Caenorhabditis elegans
Exon236912   102   X: 6484239-6484340 Caenorhabditis elegans
Exon236916   72   X: 6484739-6484810 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C15B12.5e.1 6479638 6484810 -1

1 Sequence

Length
2040

1 Sequence Ontology Term

Identifier Name Description
transcript