WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56E10.4a.1 Sequence Name  C56E10.4a.1
Length (nt)  1282   Chromosome Location  X: 6661772-6665681
Chromosome . Primary Identifier  X Chromosome Location . Start  6661772
Chromosome Location . End  6665681 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56E10.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003727 nhr-137 C56E10.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56E10.4a C56E10.4a 1092   X: 6661910-6662001

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56E10.4a.1 6661772 6665681 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon237384   230   X: 6661772-6662001 Caenorhabditis elegans
Exon237387   78   X: 6662053-6662130 Caenorhabditis elegans
Exon237390   96   X: 6662178-6662273 Caenorhabditis elegans
Exon237393   122   X: 6662385-6662506 Caenorhabditis elegans
Exon237396   128   X: 6662666-6662793 Caenorhabditis elegans
Exon237399   114   X: 6663404-6663517 Caenorhabditis elegans
Exon237402   91   X: 6663614-6663704 Caenorhabditis elegans
Exon237405   80   X: 6664035-6664114 Caenorhabditis elegans
Exon237408   77   X: 6665117-6665193 Caenorhabditis elegans
Exon237413   266   X: 6665416-6665681 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56E10.4a.1 6661772 6665681 -1

1 Sequence

Length
1282

1 Sequence Ontology Term

Identifier Name Description
transcript