WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01E11.5b.1 Sequence Name  F01E11.5b.1
Length (nt)  1399   Chromosome Location  X: 6997087-7001988
Chromosome . Primary Identifier  X Chromosome Location . Start  6997087
Chromosome Location . End  7001988 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01E11.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017157 tyra-2 F01E11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01E11.5b F01E11.5b 1029   X: 6997087-6997167

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F01E11.5b.1 6997087 7001988 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238385   81   X: 6997087-6997167 Caenorhabditis elegans
Exon238388   112   X: 6997220-6997331 Caenorhabditis elegans
Exon238392   132   X: 6997379-6997510 Caenorhabditis elegans
Exon238396   191   X: 6997565-6997755 Caenorhabditis elegans
Exon238400   101   X: 6997802-6997902 Caenorhabditis elegans
Exon238404   100   X: 6998846-6998945 Caenorhabditis elegans
Exon238407   18   X: 7000653-7000670 Caenorhabditis elegans
Exon238412   195   X: 7000905-7001099 Caenorhabditis elegans
Exon238416   188   X: 7001146-7001333 Caenorhabditis elegans
Exon238419   115   X: 7001594-7001708 Caenorhabditis elegans
Exon238422   115   X: 7001762-7001876 Caenorhabditis elegans
Exon238425   51   X: 7001938-7001988 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F01E11.5b.1 6997087 7001988 -1

1 Sequence

Length
1399

1 Sequence Ontology Term

Identifier Name Description
transcript