WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01E11.5c.1 Sequence Name  F01E11.5c.1
Length (nt)  1407   Chromosome Location  X: 6997087-7005347
Chromosome . Primary Identifier  X Chromosome Location . Start  6997087
Chromosome Location . End  7005347 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01E11.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017157 tyra-2 F01E11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01E11.5c F01E11.5c 1407   X: 6997087-6997167

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F01E11.5c.1 6997087 7005347 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238386   81   X: 6997087-6997167 Caenorhabditis elegans
Exon238390   112   X: 6997220-6997331 Caenorhabditis elegans
Exon238394   132   X: 6997379-6997510 Caenorhabditis elegans
Exon238398   191   X: 6997565-6997755 Caenorhabditis elegans
Exon238402   101   X: 6997802-6997902 Caenorhabditis elegans
Exon238406   100   X: 6998846-6998945 Caenorhabditis elegans
Exon238409   18   X: 7000653-7000670 Caenorhabditis elegans
Exon238414   195   X: 7000905-7001099 Caenorhabditis elegans
Exon238417   188   X: 7001146-7001333 Caenorhabditis elegans
Exon238421   121   X: 7001594-7001714 Caenorhabditis elegans
Exon238424   114   X: 7001763-7001876 Caenorhabditis elegans
Exon238427   49   X: 7003131-7003179 Caenorhabditis elegans
Exon238428   5   X: 7005343-7005347 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F01E11.5c.1 6997087 7005347 -1

1 Sequence

Length
1407

1 Sequence Ontology Term

Identifier Name Description
transcript