WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.3e.1 Sequence Name  C54D1.3e.1
Length (nt)  3567   Chromosome Location  X: 7126651-7139270
Chromosome . Primary Identifier  X Chromosome Location . Start  7126651
Chromosome Location . End  7139270 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002163 ist-1 C54D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.3e C54D1.3e 3567   X: 7126651-7126865

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3e.1 7126651 7139270 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238547   215   X: 7126651-7126865 Caenorhabditis elegans
Exon238550   185   X: 7132152-7132336 Caenorhabditis elegans
Exon238556   233   X: 7132891-7133123 Caenorhabditis elegans
Exon238560   138   X: 7133536-7133673 Caenorhabditis elegans
Exon238564   175   X: 7133732-7133906 Caenorhabditis elegans
Exon238568   124   X: 7133949-7134072 Caenorhabditis elegans
Exon238572   118   X: 7134127-7134244 Caenorhabditis elegans
Exon238576   188   X: 7134302-7134489 Caenorhabditis elegans
Exon238580   12   X: 7134541-7134552 Caenorhabditis elegans
Exon238582   231   X: 7135249-7135479 Caenorhabditis elegans
Exon238584   54   X: 7135529-7135582 Caenorhabditis elegans
Exon238588   222   X: 7135779-7136000 Caenorhabditis elegans
Exon238592   139   X: 7136051-7136189 Caenorhabditis elegans
Exon238596   201   X: 7136240-7136440 Caenorhabditis elegans
Exon238600   245   X: 7136880-7137124 Caenorhabditis elegans
Exon238604   162   X: 7137174-7137335 Caenorhabditis elegans
Exon238608   482   X: 7137385-7137866 Caenorhabditis elegans
Exon238612   145   X: 7138777-7138921 Caenorhabditis elegans
Exon238615   298   X: 7138973-7139270 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3e.1 7126651 7139270 1

1 Sequence

Length
3567

1 Sequence Ontology Term

Identifier Name Description
transcript