WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.3b.1 Sequence Name  C54D1.3b.1
Length (nt)  3681   Chromosome Location  X: 7126648-7139666
Chromosome . Primary Identifier  X Chromosome Location . Start  7126648
Chromosome Location . End  7139666 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002163 ist-1 C54D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.3b C54D1.3b 3282   X: 7126651-7126865

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3b.1 7126648 7139666 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238600   218   X: 7126648-7126865 Caenorhabditis elegans
Exon238603   185   X: 7132152-7132336 Caenorhabditis elegans
Exon238607   233   X: 7132891-7133123 Caenorhabditis elegans
Exon238611   138   X: 7133536-7133673 Caenorhabditis elegans
Exon238615   175   X: 7133732-7133906 Caenorhabditis elegans
Exon238619   124   X: 7133949-7134072 Caenorhabditis elegans
Exon238623   118   X: 7134127-7134244 Caenorhabditis elegans
Exon238627   188   X: 7134302-7134489 Caenorhabditis elegans
Exon238631   12   X: 7134541-7134552 Caenorhabditis elegans
Exon238639   222   X: 7135779-7136000 Caenorhabditis elegans
Exon238643   139   X: 7136051-7136189 Caenorhabditis elegans
Exon238647   201   X: 7136240-7136440 Caenorhabditis elegans
Exon238651   245   X: 7136880-7137124 Caenorhabditis elegans
Exon238655   162   X: 7137174-7137335 Caenorhabditis elegans
Exon238659   482   X: 7137385-7137866 Caenorhabditis elegans
Exon238663   145   X: 7138777-7138921 Caenorhabditis elegans
Exon238670   694   X: 7138973-7139666 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3b.1 7126648 7139666 1

1 Sequence

Length
3681

1 Sequence Ontology Term

Identifier Name Description
transcript