WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.1.1 Sequence Name  C54D1.1.1
Length (nt)  4284   Chromosome Location  X: 7159036-7166021
Chromosome . Primary Identifier  X Chromosome Location . Start  7159036
Chromosome Location . End  7166021 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004004 pgp-10 C54D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.1 C54D1.1 4149   X: 7159036-7159204

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.1.1 7159036 7166021 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238647   169   X: 7159036-7159204 Caenorhabditis elegans
Exon238648   116   X: 7159764-7159879 Caenorhabditis elegans
Exon238649   102   X: 7159926-7160027 Caenorhabditis elegans
Exon238650   132   X: 7160074-7160205 Caenorhabditis elegans
Exon238651   134   X: 7160278-7160411 Caenorhabditis elegans
Exon238652   172   X: 7160751-7160922 Caenorhabditis elegans
Exon238653   125   X: 7160975-7161099 Caenorhabditis elegans
Exon238654   82   X: 7161148-7161229 Caenorhabditis elegans
Exon238655   87   X: 7161281-7161367 Caenorhabditis elegans
Exon238656   109   X: 7161410-7161518 Caenorhabditis elegans
Exon238657   105   X: 7161571-7161675 Caenorhabditis elegans
Exon238658   188   X: 7161726-7161913 Caenorhabditis elegans
Exon238659   141   X: 7161962-7162102 Caenorhabditis elegans
Exon238660   89   X: 7162153-7162241 Caenorhabditis elegans
Exon238661   295   X: 7162291-7162585 Caenorhabditis elegans
Exon238662   117   X: 7162877-7162993 Caenorhabditis elegans
Exon238663   210   X: 7163041-7163250 Caenorhabditis elegans
Exon238664   156   X: 7163309-7163464 Caenorhabditis elegans
Exon238665   102   X: 7163513-7163614 Caenorhabditis elegans
Exon238666   66   X: 7163677-7163742 Caenorhabditis elegans
Exon238667   260   X: 7163786-7164045 Caenorhabditis elegans
Exon238668   141   X: 7164091-7164231 Caenorhabditis elegans
Exon238669   141   X: 7164278-7164418 Caenorhabditis elegans
Exon238670   160   X: 7164470-7164629 Caenorhabditis elegans
Exon238671   90   X: 7164676-7164765 Caenorhabditis elegans
Exon238672   207   X: 7165025-7165231 Caenorhabditis elegans
Exon238673   105   X: 7165281-7165385 Caenorhabditis elegans
Exon238674   211   X: 7165427-7165637 Caenorhabditis elegans
Exon238675   272   X: 7165750-7166021 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.1.1 7159036 7166021 1

1 Sequence

Length
4284

1 Sequence Ontology Term

Identifier Name Description
transcript