WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.1.1 Sequence Name  C54D1.1.1
Length (nt)  4284   Chromosome Location  X: 7159036-7166021
Chromosome . Primary Identifier  X Chromosome Location . Start  7159036
Chromosome Location . End  7166021 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004004 pgp-10 C54D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.1 C54D1.1 4149   X: 7159036-7159204

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.1.1 7159036 7166021 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238701   169   X: 7159036-7159204 Caenorhabditis elegans
Exon238702   116   X: 7159764-7159879 Caenorhabditis elegans
Exon238703   102   X: 7159926-7160027 Caenorhabditis elegans
Exon238704   132   X: 7160074-7160205 Caenorhabditis elegans
Exon238705   134   X: 7160278-7160411 Caenorhabditis elegans
Exon238706   172   X: 7160751-7160922 Caenorhabditis elegans
Exon238707   125   X: 7160975-7161099 Caenorhabditis elegans
Exon238708   82   X: 7161148-7161229 Caenorhabditis elegans
Exon238709   87   X: 7161281-7161367 Caenorhabditis elegans
Exon238710   109   X: 7161410-7161518 Caenorhabditis elegans
Exon238711   105   X: 7161571-7161675 Caenorhabditis elegans
Exon238712   188   X: 7161726-7161913 Caenorhabditis elegans
Exon238713   141   X: 7161962-7162102 Caenorhabditis elegans
Exon238714   89   X: 7162153-7162241 Caenorhabditis elegans
Exon238715   295   X: 7162291-7162585 Caenorhabditis elegans
Exon238716   117   X: 7162877-7162993 Caenorhabditis elegans
Exon238717   210   X: 7163041-7163250 Caenorhabditis elegans
Exon238718   156   X: 7163309-7163464 Caenorhabditis elegans
Exon238719   102   X: 7163513-7163614 Caenorhabditis elegans
Exon238720   66   X: 7163677-7163742 Caenorhabditis elegans
Exon238721   260   X: 7163786-7164045 Caenorhabditis elegans
Exon238722   141   X: 7164091-7164231 Caenorhabditis elegans
Exon238723   141   X: 7164278-7164418 Caenorhabditis elegans
Exon238724   160   X: 7164470-7164629 Caenorhabditis elegans
Exon238725   90   X: 7164676-7164765 Caenorhabditis elegans
Exon238726   207   X: 7165025-7165231 Caenorhabditis elegans
Exon238727   105   X: 7165281-7165385 Caenorhabditis elegans
Exon238728   211   X: 7165427-7165637 Caenorhabditis elegans
Exon238729   272   X: 7165750-7166021 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.1.1 7159036 7166021 1

1 Sequence

Length
4284

1 Sequence Ontology Term

Identifier Name Description
transcript