WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.3.1 Sequence Name  F48E3.3.1
Length (nt)  4723   Chromosome Location  X: 7495694-7500982
Chromosome . Primary Identifier  X Chromosome Location . Start  7495694
Chromosome Location . End  7500982 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018604 uggt-1 F48E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.3 F48E3.3 4482   X: 7495929-7496096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48E3.3.1 7495694 7500982 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239591   403   X: 7495694-7496096 Caenorhabditis elegans
Exon239592   745   X: 7496174-7496918 Caenorhabditis elegans
Exon239593   519   X: 7496971-7497489 Caenorhabditis elegans
Exon239594   914   X: 7497538-7498451 Caenorhabditis elegans
Exon239595   236   X: 7498498-7498733 Caenorhabditis elegans
Exon239596   637   X: 7498790-7499426 Caenorhabditis elegans
Exon239597   90   X: 7499470-7499559 Caenorhabditis elegans
Exon239598   564   X: 7499609-7500172 Caenorhabditis elegans
Exon239599   264   X: 7500222-7500485 Caenorhabditis elegans
Exon239600   131   X: 7500540-7500670 Caenorhabditis elegans
Exon239601   89   X: 7500718-7500806 Caenorhabditis elegans
Exon239602   131   X: 7500852-7500982 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48E3.3.1 7495694 7500982 -1

1 Sequence

Length
4723

1 Sequence Ontology Term

Identifier Name Description
transcript