WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.8b.1 Sequence Name  F48E3.8b.1
Length (nt)  4818   Chromosome Location  X: 7507879-7517782
Chromosome . Primary Identifier  X Chromosome Location . Start  7507879
Chromosome Location . End  7517782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018607 chts-1 F48E3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.8b F48E3.8b 4686   X: 7508011-7508109

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8b.1 7507879 7517782 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239674   231   X: 7507879-7508109 Caenorhabditis elegans
Exon239682   144   X: 7508156-7508299 Caenorhabditis elegans
Exon239690   383   X: 7508350-7508732 Caenorhabditis elegans
Exon239698   383   X: 7508789-7509171 Caenorhabditis elegans
Exon239707   88   X: 7509218-7509305 Caenorhabditis elegans
Exon239730   126   X: 7512895-7513020 Caenorhabditis elegans
Exon239738   120   X: 7513068-7513187 Caenorhabditis elegans
Exon239746   129   X: 7513231-7513359 Caenorhabditis elegans
Exon239752   396   X: 7513408-7513803 Caenorhabditis elegans
Exon239758   309   X: 7513852-7514160 Caenorhabditis elegans
Exon239764   165   X: 7514249-7514413 Caenorhabditis elegans
Exon239772   249   X: 7514486-7514734 Caenorhabditis elegans
Exon239780   252   X: 7514933-7515184 Caenorhabditis elegans
Exon239788   151   X: 7515240-7515390 Caenorhabditis elegans
Exon239796   371   X: 7515438-7515808 Caenorhabditis elegans
Exon239804   129   X: 7515855-7515983 Caenorhabditis elegans
Exon239817   132   X: 7516203-7516334 Caenorhabditis elegans
Exon239825   165   X: 7516387-7516551 Caenorhabditis elegans
Exon239833   177   X: 7516606-7516782 Caenorhabditis elegans
Exon239841   186   X: 7516828-7517013 Caenorhabditis elegans
Exon239849   113   X: 7517064-7517176 Caenorhabditis elegans
Exon239857   79   X: 7517220-7517298 Caenorhabditis elegans
Exon239865   69   X: 7517348-7517416 Caenorhabditis elegans
Exon239873   237   X: 7517463-7517699 Caenorhabditis elegans
Exon239881   34   X: 7517749-7517782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8b.1 7507879 7517782 -1

1 Sequence

Length
4818

1 Sequence Ontology Term

Identifier Name Description
transcript