WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.8h.1 Sequence Name  F48E3.8h.1
Length (nt)  5181   Chromosome Location  X: 7508011-7519389
Chromosome . Primary Identifier  X Chromosome Location . Start  7508011
Chromosome Location . End  7519389 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.8h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018607 chts-1 F48E3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.8h F48E3.8h 5181   X: 7508011-7508109

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8h.1 7508011 7519389 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239678   99   X: 7508011-7508109 Caenorhabditis elegans
Exon239687   144   X: 7508156-7508299 Caenorhabditis elegans
Exon239695   383   X: 7508350-7508732 Caenorhabditis elegans
Exon239703   383   X: 7508789-7509171 Caenorhabditis elegans
Exon239711   88   X: 7509218-7509305 Caenorhabditis elegans
Exon239735   126   X: 7512895-7513020 Caenorhabditis elegans
Exon239743   120   X: 7513068-7513187 Caenorhabditis elegans
Exon239749   129   X: 7513231-7513359 Caenorhabditis elegans
Exon239755   396   X: 7513408-7513803 Caenorhabditis elegans
Exon239761   309   X: 7513852-7514160 Caenorhabditis elegans
Exon239769   165   X: 7514249-7514413 Caenorhabditis elegans
Exon239777   249   X: 7514486-7514734 Caenorhabditis elegans
Exon239785   252   X: 7514933-7515184 Caenorhabditis elegans
Exon239793   151   X: 7515240-7515390 Caenorhabditis elegans
Exon239801   371   X: 7515438-7515808 Caenorhabditis elegans
Exon239809   129   X: 7515855-7515983 Caenorhabditis elegans
Exon239815   123   X: 7516031-7516153 Caenorhabditis elegans
Exon239822   132   X: 7516203-7516334 Caenorhabditis elegans
Exon239830   165   X: 7516387-7516551 Caenorhabditis elegans
Exon239838   177   X: 7516606-7516782 Caenorhabditis elegans
Exon239846   186   X: 7516828-7517013 Caenorhabditis elegans
Exon239854   113   X: 7517064-7517176 Caenorhabditis elegans
Exon239862   79   X: 7517220-7517298 Caenorhabditis elegans
Exon239870   69   X: 7517348-7517416 Caenorhabditis elegans
Exon239878   237   X: 7517463-7517699 Caenorhabditis elegans
Exon239886   171   X: 7517989-7518159 Caenorhabditis elegans
Exon239890   126   X: 7518988-7519113 Caenorhabditis elegans
Exon239893   109   X: 7519281-7519389 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8h.1 7508011 7519389 -1

1 Sequence

Length
5181

1 Sequence Ontology Term

Identifier Name Description
transcript