WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.8g.1 Sequence Name  F48E3.8g.1
Length (nt)  5337   Chromosome Location  X: 7508011-7519669
Chromosome . Primary Identifier  X Chromosome Location . Start  7508011
Chromosome Location . End  7519669 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.8g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018607 chts-1 F48E3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.8g F48E3.8g 5337   X: 7508011-7508109

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8g.1 7508011 7519669 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239680   99   X: 7508011-7508109 Caenorhabditis elegans
Exon239686   144   X: 7508156-7508299 Caenorhabditis elegans
Exon239694   383   X: 7508350-7508732 Caenorhabditis elegans
Exon239702   383   X: 7508789-7509171 Caenorhabditis elegans
Exon239710   88   X: 7509218-7509305 Caenorhabditis elegans
Exon239734   126   X: 7512895-7513020 Caenorhabditis elegans
Exon239742   120   X: 7513068-7513187 Caenorhabditis elegans
Exon239748   129   X: 7513231-7513359 Caenorhabditis elegans
Exon239754   396   X: 7513408-7513803 Caenorhabditis elegans
Exon239760   309   X: 7513852-7514160 Caenorhabditis elegans
Exon239768   165   X: 7514249-7514413 Caenorhabditis elegans
Exon239776   249   X: 7514486-7514734 Caenorhabditis elegans
Exon239784   252   X: 7514933-7515184 Caenorhabditis elegans
Exon239792   151   X: 7515240-7515390 Caenorhabditis elegans
Exon239800   371   X: 7515438-7515808 Caenorhabditis elegans
Exon239808   129   X: 7515855-7515983 Caenorhabditis elegans
Exon239814   123   X: 7516031-7516153 Caenorhabditis elegans
Exon239821   132   X: 7516203-7516334 Caenorhabditis elegans
Exon239829   165   X: 7516387-7516551 Caenorhabditis elegans
Exon239837   177   X: 7516606-7516782 Caenorhabditis elegans
Exon239845   186   X: 7516828-7517013 Caenorhabditis elegans
Exon239853   113   X: 7517064-7517176 Caenorhabditis elegans
Exon239861   79   X: 7517220-7517298 Caenorhabditis elegans
Exon239869   69   X: 7517348-7517416 Caenorhabditis elegans
Exon239877   237   X: 7517463-7517699 Caenorhabditis elegans
Exon239885   171   X: 7517989-7518159 Caenorhabditis elegans
Exon239889   126   X: 7518988-7519113 Caenorhabditis elegans
Exon239895   174   X: 7519281-7519454 Caenorhabditis elegans
Exon239896   91   X: 7519579-7519669 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8g.1 7508011 7519669 -1

1 Sequence

Length
5337

1 Sequence Ontology Term

Identifier Name Description
transcript