WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53C9.3a.1 Sequence Name  C53C9.3a.1
Length (nt)  1904   Chromosome Location  X: 7690543-7707127
Chromosome . Primary Identifier  X Chromosome Location . Start  7690543
Chromosome Location . End  7707127 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C9.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002242 kvs-1 C53C9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53C9.3a C53C9.3a 1473   X: 7690933-7690990

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3a.1 7690543 7707127 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240304   448   X: 7690543-7690990 Caenorhabditis elegans
Exon240308   100   X: 7691736-7691835 Caenorhabditis elegans
Exon240312   230   X: 7691888-7692117 Caenorhabditis elegans
Exon240316   183   X: 7692777-7692959 Caenorhabditis elegans
Exon240320   115   X: 7693008-7693122 Caenorhabditis elegans
Exon240325   55   X: 7693678-7693732 Caenorhabditis elegans
Exon240329   153   X: 7694281-7694433 Caenorhabditis elegans
Exon240333   43   X: 7694523-7694565 Caenorhabditis elegans
Exon240337   182   X: 7694944-7695125 Caenorhabditis elegans
Exon240341   222   X: 7696007-7696228 Caenorhabditis elegans
Exon240345   91   X: 7696431-7696521 Caenorhabditis elegans
Exon240353   82   X: 7707046-7707127 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3a.1 7690543 7707127 -1

1 Sequence

Length
1904

1 Sequence Ontology Term

Identifier Name Description
transcript