WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53C9.3b.1 Sequence Name  C53C9.3b.1
Length (nt)  1488   Chromosome Location  X: 7690933-7696704
Chromosome . Primary Identifier  X Chromosome Location . Start  7690933
Chromosome Location . End  7696704 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C9.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002242 kvs-1 C53C9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53C9.3b C53C9.3b 1488   X: 7690933-7690990

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3b.1 7690933 7696704 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240306   58   X: 7690933-7690990 Caenorhabditis elegans
Exon240309   100   X: 7691736-7691835 Caenorhabditis elegans
Exon240313   230   X: 7691888-7692117 Caenorhabditis elegans
Exon240317   183   X: 7692777-7692959 Caenorhabditis elegans
Exon240321   115   X: 7693008-7693122 Caenorhabditis elegans
Exon240326   55   X: 7693678-7693732 Caenorhabditis elegans
Exon240330   153   X: 7694281-7694433 Caenorhabditis elegans
Exon240334   43   X: 7694523-7694565 Caenorhabditis elegans
Exon240338   182   X: 7694944-7695125 Caenorhabditis elegans
Exon240342   222   X: 7696007-7696228 Caenorhabditis elegans
Exon240346   91   X: 7696431-7696521 Caenorhabditis elegans
Exon240349   56   X: 7696649-7696704 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3b.1 7690933 7696704 -1

1 Sequence

Length
1488

1 Sequence Ontology Term

Identifier Name Description
transcript