WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47C12.6g.1 Sequence Name  C47C12.6g.1
Length (nt)  2277   Chromosome Location  X: 7753070-7774675
Chromosome . Primary Identifier  X Chromosome Location . Start  7753070
Chromosome Location . End  7774675 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47C12.6g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47C12.6g C47C12.6g 2277   X: 7753070-7753079

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6g.1 7753070 7774675 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240429   10   X: 7753070-7753079 Caenorhabditis elegans
Exon240431   83   X: 7753993-7754075 Caenorhabditis elegans
Exon240432   138   X: 7754746-7754883 Caenorhabditis elegans
Exon240433   54   X: 7755198-7755251 Caenorhabditis elegans
Exon240453   99   X: 7763608-7763706 Caenorhabditis elegans
Exon240461   213   X: 7763833-7764045 Caenorhabditis elegans
Exon240469   99   X: 7764110-7764208 Caenorhabditis elegans
Exon240477   65   X: 7764251-7764315 Caenorhabditis elegans
Exon240485   136   X: 7765183-7765318 Caenorhabditis elegans
Exon240496   118   X: 7765642-7765759 Caenorhabditis elegans
Exon240502   54   X: 7765947-7766000 Caenorhabditis elegans
Exon240512   62   X: 7766540-7766601 Caenorhabditis elegans
Exon240520   158   X: 7766646-7766803 Caenorhabditis elegans
Exon240528   262   X: 7766852-7767113 Caenorhabditis elegans
Exon240536   217   X: 7767164-7767380 Caenorhabditis elegans
Exon240544   149   X: 7767426-7767574 Caenorhabditis elegans
Exon240552   72   X: 7767979-7768050 Caenorhabditis elegans
Exon240564   103   X: 7774342-7774444 Caenorhabditis elegans
Exon240570   185   X: 7774491-7774675 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6g.1 7753070 7774675 1

1 Sequence

Length
2277

1 Sequence Ontology Term

Identifier Name Description
transcript