WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47C12.6c.1 Sequence Name  C47C12.6c.1
Length (nt)  2367   Chromosome Location  X: 7763219-7774675
Chromosome . Primary Identifier  X Chromosome Location . Start  7763219
Chromosome Location . End  7774675 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47C12.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47C12.6c C47C12.6c 2367   X: 7763219-7763563

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6c.1 7763219 7774675 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240441   345   X: 7763219-7763563 Caenorhabditis elegans
Exon240449   99   X: 7763608-7763706 Caenorhabditis elegans
Exon240457   213   X: 7763833-7764045 Caenorhabditis elegans
Exon240465   99   X: 7764110-7764208 Caenorhabditis elegans
Exon240473   65   X: 7764251-7764315 Caenorhabditis elegans
Exon240481   136   X: 7765183-7765318 Caenorhabditis elegans
Exon240487   30   X: 7765387-7765416 Caenorhabditis elegans
Exon240492   118   X: 7765642-7765759 Caenorhabditis elegans
Exon240500   54   X: 7765947-7766000 Caenorhabditis elegans
Exon240508   62   X: 7766540-7766601 Caenorhabditis elegans
Exon240516   158   X: 7766646-7766803 Caenorhabditis elegans
Exon240524   262   X: 7766852-7767113 Caenorhabditis elegans
Exon240532   217   X: 7767164-7767380 Caenorhabditis elegans
Exon240540   149   X: 7767426-7767574 Caenorhabditis elegans
Exon240548   72   X: 7767979-7768050 Caenorhabditis elegans
Exon240560   103   X: 7774342-7774444 Caenorhabditis elegans
Exon240566   185   X: 7774491-7774675 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6c.1 7763219 7774675 1

1 Sequence

Length
2367

1 Sequence Ontology Term

Identifier Name Description
transcript