WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47C12.6e.1 Sequence Name  C47C12.6e.1
Length (nt)  2505   Chromosome Location  X: 7763219-7774675
Chromosome . Primary Identifier  X Chromosome Location . Start  7763219
Chromosome Location . End  7774675 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47C12.6e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47C12.6e C47C12.6e 2505   X: 7763219-7763563

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6e.1 7763219 7774675 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240443   345   X: 7763219-7763563 Caenorhabditis elegans
Exon240451   99   X: 7763608-7763706 Caenorhabditis elegans
Exon240459   213   X: 7763833-7764045 Caenorhabditis elegans
Exon240467   99   X: 7764110-7764208 Caenorhabditis elegans
Exon240475   65   X: 7764251-7764315 Caenorhabditis elegans
Exon240483   136   X: 7765183-7765318 Caenorhabditis elegans
Exon240494   118   X: 7765642-7765759 Caenorhabditis elegans
Exon240501   54   X: 7765947-7766000 Caenorhabditis elegans
Exon240504   168   X: 7766087-7766254 Caenorhabditis elegans
Exon240510   62   X: 7766540-7766601 Caenorhabditis elegans
Exon240518   158   X: 7766646-7766803 Caenorhabditis elegans
Exon240526   262   X: 7766852-7767113 Caenorhabditis elegans
Exon240534   217   X: 7767164-7767380 Caenorhabditis elegans
Exon240542   149   X: 7767426-7767574 Caenorhabditis elegans
Exon240550   72   X: 7767979-7768050 Caenorhabditis elegans
Exon240562   103   X: 7774342-7774444 Caenorhabditis elegans
Exon240568   185   X: 7774491-7774675 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6e.1 7763219 7774675 1

1 Sequence

Length
2505

1 Sequence Ontology Term

Identifier Name Description
transcript