WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5e.1 Sequence Name  C54D2.5e.1
Length (nt)  6150   Chromosome Location  X: 7847685-7861307
Chromosome . Primary Identifier  X Chromosome Location . Start  7847685
Chromosome Location . End  7861307 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5e C54D2.5e 5535   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5e.1 7847685 7861307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240700   594   X: 7847685-7848278 Caenorhabditis elegans
Exon240708   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240715   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240722   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240729   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240736   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240742   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240750   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240757   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240764   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240771   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240774   151   X: 7854051-7854201 Caenorhabditis elegans
Exon240786   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240793   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240800   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240807   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240814   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240821   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240828   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240835   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240842   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240849   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240856   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240863   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240870   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240877   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240884   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240891   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240899   144   X: 7861164-7861307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5e.1 7847685 7861307 -1

1 Sequence

Length
6150

1 Sequence Ontology Term

Identifier Name Description
transcript