WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5c.1 Sequence Name  C54D2.5c.1
Length (nt)  6181   Chromosome Location  X: 7847678-7861307
Chromosome . Primary Identifier  X Chromosome Location . Start  7847678
Chromosome Location . End  7861307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5c C54D2.5c 5559   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5c.1 7847678 7861307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240730   601   X: 7847678-7848278 Caenorhabditis elegans
Exon240740   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240747   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240754   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240761   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240768   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240777   150   X: 7851091-7851240 Caenorhabditis elegans
Exon240782   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240789   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240796   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240803   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240813   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240818   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240825   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240832   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240839   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240846   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240853   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240860   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240867   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240874   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240881   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240888   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240895   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240902   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240909   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240916   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240923   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240931   144   X: 7861164-7861307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5c.1 7847678 7861307 -1

1 Sequence

Length
6181

1 Sequence Ontology Term

Identifier Name Description
transcript