WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5d.1 Sequence Name  C54D2.5d.1
Length (nt)  6273   Chromosome Location  X: 7847685-7861307
Chromosome . Primary Identifier  X Chromosome Location . Start  7847685
Chromosome Location . End  7861307 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5d C54D2.5d 5658   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5d.1 7847685 7861307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240733   594   X: 7847685-7848278 Caenorhabditis elegans
Exon240741   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240748   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240755   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240762   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240769   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240775   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240783   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240790   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240797   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240804   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240807   151   X: 7854051-7854201 Caenorhabditis elegans
Exon240814   123   X: 7854306-7854428 Caenorhabditis elegans
Exon240819   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240826   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240833   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240840   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240847   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240854   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240861   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240868   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240875   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240882   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240889   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240896   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240903   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240910   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240917   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240924   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240932   144   X: 7861164-7861307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5d.1 7847685 7861307 -1

1 Sequence

Length
6273

1 Sequence Ontology Term

Identifier Name Description
transcript