WormMine: Gene WBGene00022980

• WormBase Gene ID: WBGene00022980
• Gene Name: F08F1.t2
• Sequence Name: F08F1.t2
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by emr-1; lem-2; and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001272
• Genetic Position: :±
• Length (nt): 82

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00022980

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F08F1.t2	F08F1.t2	82	X: 8417912-8417993

Other

0 CDSs

4 RNAi Result

• WBRNAi00040793
• WBRNAi00012900
• WBRNAi00030651
• WBRNAi00075921

13 Allele

• gk964260
• gk962707
• gk964193
• gk964194
• gk963896
• gk963732
• gk964126
• gk964401
• gk964402
• gk584153
• gk624547
• gk287389
• gk287388

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00022980
• Start: 8417912
• End: 8417993
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Genes that showed increased mRNA expression in emr-1(RNAi);lem-2(tm1582) comparing to N2.	Library siggenes in R was applied to select the differentially expressed loci using the false discovery rate-based SAM method. Genes presenting a delta value > 4 were considered to be significantly altered.	WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
	Genes that showed increased mRNA expression in emr-1(gk119) comparing to N2.	Library siggenes in R was applied to select the differentially expressed loci using the false discovery rate-based SAM method. Genes presenting a delta value > 4 were considered to be significantly altered.	WBPaper00044786:emr-1(gk119)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00022980
• Start: 8417912
• End: 8417993
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 82

1 Sequence Ontology Term