WormMine: Gene WBGene00023123

• WormBase Gene ID: WBGene00023123
• Gene Name: R04E5.t6
• Sequence Name: R04E5.t6
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by pgrn-1 and rrf-3 based on RNA-seq studies.
• Biotype: SO:0001272
• Genetic Position: :±
• Length (nt): 71

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023123

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:R04E5.t6	R04E5.t6	71	X: 8796822-8796892

Other

0 CDSs

3 RNAi Result

• WBRNAi00034586
• WBRNAi00017411
• WBRNAi00081685

8 Allele

• gk964260
• gk962707
• gk963732
• gk964126
• gk477667
• gk820792
• gk652238
• gk784002

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023123
• Start: 8796822
• End: 8796892
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in rrf-3(pk1426) comparing to in N2 at embryo stage.	DESeq2v 1.18.1, fold change > 1.5, adjusted p-value < 0.01.	WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
	Transcripts that showed significantly increased expression in rrf-3(pk1426) comparing to in N2 at L3 larva stage.	DESeq2v 1.18.1, fold change > 1.5, adjusted p-value < 0.01.	WBPaper00056169:rrf-3(pk1426)_upregulated_L3
	Genes differentially expressed in pgrn-1(tm985) and ced-1(e1735) but not in ced-3(n717) as compared to N2E.	Differential expression analysis was performed using the EdgeR Bioconductor package (19910308), and differentially expressed genes were selected based on False Discovery Rate (FDR Benjamini Hochberg adjusted p-values) estimated at <=5%.	WBPaper00044246:pgrn-1_ced-1_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023123
• Start: 8796822
• End: 8796892
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 71

1 Sequence Ontology Term