WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C25A11.4j.1 Sequence Name  C25A11.4j.1
Length (nt)  3831   Chromosome Location  X: 9104692-9113324
Chromosome . Primary Identifier  X Chromosome Location . Start  9104692
Chromosome Location . End  9113324 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C25A11.4j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C25A11.4j C25A11.4j 3831   X: 9104692-9104736

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C25A11.4j.1 9104692 9113324 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon243596   45   X: 9104692-9104736 Caenorhabditis elegans
Exon243608   114   X: 9105193-9105306 Caenorhabditis elegans
Exon243623   920   X: 9105377-9106296 Caenorhabditis elegans
Exon243640   183   X: 9106364-9106546 Caenorhabditis elegans
Exon243656   651   X: 9106596-9107246 Caenorhabditis elegans
Exon243671   71   X: 9107304-9107374 Caenorhabditis elegans
Exon243687   173   X: 9109088-9109260 Caenorhabditis elegans
Exon243701   123   X: 9109674-9109796 Caenorhabditis elegans
Exon243716   119   X: 9109918-9110036 Caenorhabditis elegans
Exon243730   421   X: 9110262-9110682 Caenorhabditis elegans
Exon243745   160   X: 9111734-9111893 Caenorhabditis elegans
Exon243759   106   X: 9112058-9112163 Caenorhabditis elegans
Exon243773   120   X: 9112212-9112331 Caenorhabditis elegans
Exon243787   120   X: 9112374-9112493 Caenorhabditis elegans
Exon243801   193   X: 9112544-9112736 Caenorhabditis elegans
Exon243815   137   X: 9112963-9113099 Caenorhabditis elegans
Exon243824   175   X: 9113150-9113324 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C25A11.4j.1 9104692 9113324 1

1 Sequence

Length
3831

1 Sequence Ontology Term

Identifier Name Description
transcript