WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0563.2a.1 Sequence Name  B0563.2a.1
Length (nt)  1510   Chromosome Location  X: 9163164-9166443
Chromosome . Primary Identifier  X Chromosome Location . Start  9163164
Chromosome Location . End  9166443 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0563.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006637 tsp-11 B0563.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0563.2a B0563.2a 864   X: 9163164-9163253

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0563.2a.1 9163164 9166443 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon243854   90   X: 9163164-9163253 Caenorhabditis elegans
Exon243857   126   X: 9163944-9164069 Caenorhabditis elegans
Exon243860   126   X: 9164116-9164241 Caenorhabditis elegans
Exon243863   75   X: 9164418-9164492 Caenorhabditis elegans
Exon243866   132   X: 9164578-9164709 Caenorhabditis elegans
Exon243869   159   X: 9165093-9165251 Caenorhabditis elegans
Exon243872   93   X: 9165497-9165589 Caenorhabditis elegans
Exon243874   82   X: 9165640-9165721 Caenorhabditis elegans
Exon243876   84   X: 9165769-9165852 Caenorhabditis elegans
Exon243880   543   X: 9165901-9166443 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0563.2a.1 9163164 9166443 1

1 Sequence

Length
1510

1 Sequence Ontology Term

Identifier Name Description
transcript