WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:B0563.2a Sequence Name  B0563.2a
Length (nt)  864   Chromosome Location  X: 9163164-9163253
Chromosome . Primary Identifier  X Chromosome Location . Start  9163164
Chromosome Location . End  9163253
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0563.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE45545 TSP-11, isoform a 32.2 287 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00039200
WBRNAi00009861
WBRNAi00028208

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:B0563.2a 9163164 9163253 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006637 tsp-11 B0563.2 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:B0563.2a 9163164 9163253 1
CDS:B0563.2a 9163944 9164069 1
CDS:B0563.2a 9164116 9164241 1
CDS:B0563.2a 9164418 9164492 1
CDS:B0563.2a 9164578 9164709 1
CDS:B0563.2a 9165093 9165251 1
CDS:B0563.2a 9165497 9165589 1
CDS:B0563.2a 9165640 9165702 1

1 Sequence

Length
864

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0563.2a.1 B0563.2a.1 1510   X: 9163164-9166443
Transcript:B0563.2a.2 B0563.2a.2 1482   X: 9163164-9166368