WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20B5.3b.1 Sequence Name  T20B5.3b.1
Length (nt)  3080   Chromosome Location  X: 9343335-9347430
Chromosome . Primary Identifier  X Chromosome Location . Start  9343335
Chromosome Location . End  9347430 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20B5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020596 oga-1 T20B5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20B5.3b T20B5.3b 2619   X: 9343744-9343907

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T20B5.3b.1 9343335 9347430 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244238   573   X: 9343335-9343907 Caenorhabditis elegans
Exon244240   322   X: 9343985-9344306 Caenorhabditis elegans
Exon244241   271   X: 9344360-9344630 Caenorhabditis elegans
Exon244244   297   X: 9344688-9344984 Caenorhabditis elegans
Exon244246   254   X: 9345066-9345319 Caenorhabditis elegans
Exon244248   223   X: 9345371-9345593 Caenorhabditis elegans
Exon244250   466   X: 9345713-9346178 Caenorhabditis elegans
Exon244253   163   X: 9346223-9346385 Caenorhabditis elegans
Exon244255   236   X: 9346429-9346664 Caenorhabditis elegans
Exon244257   150   X: 9346996-9347145 Caenorhabditis elegans
Exon244259   56   X: 9347255-9347310 Caenorhabditis elegans
Exon244261   69   X: 9347362-9347430 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T20B5.3b.1 9343335 9347430 -1

1 Sequence

Length
3080

1 Sequence Ontology Term

Identifier Name Description
transcript