WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20B5.3b.1 Sequence Name  T20B5.3b.1
Length (nt)  3080   Chromosome Location  X: 9343335-9347430
Chromosome . Primary Identifier  X Chromosome Location . Start  9343335
Chromosome Location . End  9347430 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20B5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020596 oga-1 T20B5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20B5.3b T20B5.3b 2619   X: 9343744-9343907

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T20B5.3b.1 9343335 9347430 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244294   573   X: 9343335-9343907 Caenorhabditis elegans
Exon244296   322   X: 9343985-9344306 Caenorhabditis elegans
Exon244297   271   X: 9344360-9344630 Caenorhabditis elegans
Exon244300   297   X: 9344688-9344984 Caenorhabditis elegans
Exon244302   254   X: 9345066-9345319 Caenorhabditis elegans
Exon244304   223   X: 9345371-9345593 Caenorhabditis elegans
Exon244306   466   X: 9345713-9346178 Caenorhabditis elegans
Exon244309   163   X: 9346223-9346385 Caenorhabditis elegans
Exon244311   236   X: 9346429-9346664 Caenorhabditis elegans
Exon244313   150   X: 9346996-9347145 Caenorhabditis elegans
Exon244315   56   X: 9347255-9347310 Caenorhabditis elegans
Exon244317   69   X: 9347362-9347430 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T20B5.3b.1 9343335 9347430 -1

1 Sequence

Length
3080

1 Sequence Ontology Term

Identifier Name Description
transcript