WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E01H11.1e.1 Sequence Name  E01H11.1e.1
Length (nt)  2727   Chromosome Location  X: 9376118-9386044
Chromosome . Primary Identifier  X Chromosome Location . Start  9376118
Chromosome Location . End  9386044 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E01H11.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004033 pkc-2 E01H11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E01H11.1e E01H11.1e 2256   X: 9376271-9376356

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E01H11.1e.1 9376118 9386044 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244332   239   X: 9376118-9376356 Caenorhabditis elegans
Exon244335   167   X: 9376536-9376702 Caenorhabditis elegans
Exon244341   70   X: 9380052-9380121 Caenorhabditis elegans
Exon244347   101   X: 9380340-9380440 Caenorhabditis elegans
Exon244353   83   X: 9380582-9380664 Caenorhabditis elegans
Exon244359   241   X: 9380737-9380977 Caenorhabditis elegans
Exon244365   160   X: 9381132-9381291 Caenorhabditis elegans
Exon244371   241   X: 9381338-9381578 Caenorhabditis elegans
Exon244377   321   X: 9381624-9381944 Caenorhabditis elegans
Exon244383   204   X: 9382224-9382427 Caenorhabditis elegans
Exon244389   211   X: 9382476-9382686 Caenorhabditis elegans
Exon244395   140   X: 9382734-9382873 Caenorhabditis elegans
Exon244401   78   X: 9383014-9383091 Caenorhabditis elegans
Exon244408   471   X: 9385574-9386044 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E01H11.1e.1 9376118 9386044 1

1 Sequence

Length
2727

1 Sequence Ontology Term

Identifier Name Description
transcript