WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C55C2.5a.1 Sequence Name  C55C2.5a.1
Length (nt)  1876   Chromosome Location  I: 2571740-2576020
Chromosome . Primary Identifier  I Chromosome Location . Start  2571740
Chromosome Location . End  2576020 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55C2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000006 aat-5 C55C2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C55C2.5a C55C2.5a 1614   I: 2571988-2572039

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C55C2.5a.1 2571740 2576020 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4629   300   I: 2571740-2572039 Caenorhabditis elegans
Exon4634   208   I: 2572093-2572300 Caenorhabditis elegans
Exon4637   164   I: 2572356-2572519 Caenorhabditis elegans
Exon4641   167   I: 2572570-2572736 Caenorhabditis elegans
Exon4646   201   I: 2573741-2573941 Caenorhabditis elegans
Exon4649   269   I: 2573999-2574267 Caenorhabditis elegans
Exon4652   132   I: 2574313-2574444 Caenorhabditis elegans
Exon4656   64   I: 2574521-2574584 Caenorhabditis elegans
Exon4660   191   I: 2575439-2575629 Caenorhabditis elegans
Exon4667   180   I: 2575841-2576020 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C55C2.5a.1 2571740 2576020 -1

1 Sequence

Length
1876

1 Sequence Ontology Term

Identifier Name Description
transcript