WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK899.8k.1 Sequence Name  ZK899.8k.1
Length (nt)  4171   Chromosome Location  X: 9472470-9516442
Chromosome . Primary Identifier  X Chromosome Location . Start  9472470
Chromosome Location . End  9516442 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK899.8k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001516 gap-2 ZK899.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK899.8k ZK899.8k 3618   X: 9472470-9472620

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8k.1 9472470 9516442 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245466   151   X: 9472470-9472620 Caenorhabditis elegans
Exon245470   122   X: 9475263-9475384 Caenorhabditis elegans
Exon245474   70   X: 9476313-9476382 Caenorhabditis elegans
Exon245477   180   X: 9476965-9477144 Caenorhabditis elegans
Exon245495   221   X: 9496541-9496761 Caenorhabditis elegans
Exon245512   92   X: 9498111-9498202 Caenorhabditis elegans
Exon245529   173   X: 9502841-9503013 Caenorhabditis elegans
Exon245542   121   X: 9503911-9504031 Caenorhabditis elegans
Exon245558   201   X: 9510525-9510725 Caenorhabditis elegans
Exon245573   135   X: 9511028-9511162 Caenorhabditis elegans
Exon245591   226   X: 9513131-9513356 Caenorhabditis elegans
Exon245607   344   X: 9513420-9513763 Caenorhabditis elegans
Exon245623   339   X: 9513812-9514150 Caenorhabditis elegans
Exon245639   261   X: 9514304-9514564 Caenorhabditis elegans
Exon245655   375   X: 9514709-9515083 Caenorhabditis elegans
Exon245671   193   X: 9515137-9515329 Caenorhabditis elegans
Exon245688   164   X: 9515380-9515543 Caenorhabditis elegans
Exon245703   157   X: 9515589-9515745 Caenorhabditis elegans
Exon245718   646   X: 9515797-9516442 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8k.1 9472470 9516442 1

1 Sequence

Length
4171

1 Sequence Ontology Term

Identifier Name Description
transcript