WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK899.8c.1 Sequence Name  ZK899.8c.1
Length (nt)  3780   Chromosome Location  X: 9479502-9515889
Chromosome . Primary Identifier  X Chromosome Location . Start  9479502
Chromosome Location . End  9515889 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK899.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001516 gap-2 ZK899.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK899.8c ZK899.8c 3780   X: 9479502-9479848

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8c.1 9479502 9515889 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245478   347   X: 9479502-9479848 Caenorhabditis elegans
Exon245479   272   X: 9480648-9480919 Caenorhabditis elegans
Exon245489   221   X: 9496541-9496761 Caenorhabditis elegans
Exon245497   60   X: 9497668-9497727 Caenorhabditis elegans
Exon245505   92   X: 9498111-9498202 Caenorhabditis elegans
Exon245520   173   X: 9502841-9503013 Caenorhabditis elegans
Exon245533   121   X: 9503911-9504031 Caenorhabditis elegans
Exon245549   201   X: 9510525-9510725 Caenorhabditis elegans
Exon245563   135   X: 9511028-9511162 Caenorhabditis elegans
Exon245579   226   X: 9513131-9513356 Caenorhabditis elegans
Exon245595   344   X: 9513420-9513763 Caenorhabditis elegans
Exon245611   339   X: 9513812-9514150 Caenorhabditis elegans
Exon245627   261   X: 9514304-9514564 Caenorhabditis elegans
Exon245643   375   X: 9514709-9515083 Caenorhabditis elegans
Exon245659   193   X: 9515137-9515329 Caenorhabditis elegans
Exon245675   170   X: 9515374-9515543 Caenorhabditis elegans
Exon245691   157   X: 9515589-9515745 Caenorhabditis elegans
Exon245705   93   X: 9515797-9515889 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8c.1 9479502 9515889 1

1 Sequence

Length
3780

1 Sequence Ontology Term

Identifier Name Description
transcript