WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK899.8b.1 Sequence Name  ZK899.8b.1
Length (nt)  4051   Chromosome Location  X: 9475283-9516427
Chromosome . Primary Identifier  X Chromosome Location . Start  9475283
Chromosome Location . End  9516427 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK899.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001516 gap-2 ZK899.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK899.8b ZK899.8b 3513   X: 9475283-9475384

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8b.1 9475283 9516427 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245527   102   X: 9475283-9475384 Caenorhabditis elegans
Exon245529   70   X: 9476313-9476382 Caenorhabditis elegans
Exon245532   180   X: 9476965-9477144 Caenorhabditis elegans
Exon245544   221   X: 9496541-9496761 Caenorhabditis elegans
Exon245552   60   X: 9497668-9497727 Caenorhabditis elegans
Exon245560   92   X: 9498111-9498202 Caenorhabditis elegans
Exon245575   173   X: 9502841-9503013 Caenorhabditis elegans
Exon245588   121   X: 9503911-9504031 Caenorhabditis elegans
Exon245604   201   X: 9510525-9510725 Caenorhabditis elegans
Exon245618   135   X: 9511028-9511162 Caenorhabditis elegans
Exon245634   226   X: 9513131-9513356 Caenorhabditis elegans
Exon245650   344   X: 9513420-9513763 Caenorhabditis elegans
Exon245666   339   X: 9513812-9514150 Caenorhabditis elegans
Exon245682   261   X: 9514304-9514564 Caenorhabditis elegans
Exon245698   375   X: 9514709-9515083 Caenorhabditis elegans
Exon245714   193   X: 9515137-9515329 Caenorhabditis elegans
Exon245730   170   X: 9515374-9515543 Caenorhabditis elegans
Exon245746   157   X: 9515589-9515745 Caenorhabditis elegans
Exon245766   631   X: 9515797-9516427 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8b.1 9475283 9516427 1

1 Sequence

Length
4051

1 Sequence Ontology Term

Identifier Name Description
transcript