WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5j.1 Sequence Name  F49E2.5j.1
Length (nt)  4439   Chromosome Location  X: 9543652-9560804
Chromosome . Primary Identifier  X Chromosome Location . Start  9543652
Chromosome Location . End  9560804 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5j F49E2.5j 3303   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5j.1 9543652 9560804 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245838   160   X: 9543652-9543811 Caenorhabditis elegans
Exon245853   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245884   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245913   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245942   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245969   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245986   132   X: 9554692-9554823 Caenorhabditis elegans
Exon246007   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246023   162   X: 9555416-9555577 Caenorhabditis elegans
Exon246037   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246067   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246093   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246128   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246153   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246179   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246205   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246231   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246257   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246283   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246326   1010   X: 9559795-9560804 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5j.1 9543652 9560804 1

1 Sequence

Length
4439

1 Sequence Ontology Term

Identifier Name Description
transcript