WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5a.1 Sequence Name  F49E2.5a.1
Length (nt)  4761   Chromosome Location  X: 9543670-9560799
Chromosome . Primary Identifier  X Chromosome Location . Start  9543670
Chromosome Location . End  9560799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5a F49E2.5a 3648   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5a.1 9543670 9560799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245841   142   X: 9543670-9543811 Caenorhabditis elegans
Exon245851   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245873   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245902   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245931   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245960   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245978   132   X: 9554692-9554823 Caenorhabditis elegans
Exon246001   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246049   555   X: 9555799-9556353 Caenorhabditis elegans
Exon246059   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246085   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246120   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246145   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246171   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246197   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246223   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246249   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246275   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246316   1005   X: 9559795-9560799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5a.1 9543670 9560799 1

1 Sequence

Length
4761

1 Sequence Ontology Term

Identifier Name Description
transcript