WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5n.1 Sequence Name  F49E2.5n.1
Length (nt)  4503   Chromosome Location  X: 9543671-9560794
Chromosome . Primary Identifier  X Chromosome Location . Start  9543671
Chromosome Location . End  9560794 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5n F49E2.5n 3396   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5n.1 9543671 9560794 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245842   141   X: 9543671-9543811 Caenorhabditis elegans
Exon245856   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245891   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245920   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245949   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245975   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245992   132   X: 9554692-9554823 Caenorhabditis elegans
Exon246013   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246029   162   X: 9555416-9555577 Caenorhabditis elegans
Exon246043   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246074   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246100   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246113   93   X: 9556958-9557050 Caenorhabditis elegans
Exon246134   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246160   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246186   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246212   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246238   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246264   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246290   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246312   1000   X: 9559795-9560794 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5n.1 9543671 9560794 1

1 Sequence

Length
4503

1 Sequence Ontology Term

Identifier Name Description
transcript