WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5m.2 Sequence Name  F49E2.5m.2
Length (nt)  4836   Chromosome Location  X: 9552834-9560799
Chromosome . Primary Identifier  X Chromosome Location . Start  9552834
Chromosome Location . End  9560799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5m.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5m F49E2.5m 3858   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5m.2 9552834 9560799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245844   167   X: 9552834-9553000 Caenorhabditis elegans
Exon245890   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245919   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245948   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245974   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245991   132   X: 9554692-9554823 Caenorhabditis elegans
Exon246012   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246028   162   X: 9555416-9555577 Caenorhabditis elegans
Exon246042   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246056   555   X: 9555799-9556353 Caenorhabditis elegans
Exon246073   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246099   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246133   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246159   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246185   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246211   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246237   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246263   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246289   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246321   1005   X: 9559795-9560799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5m.2 9552834 9560799 1

1 Sequence

Length
4836

1 Sequence Ontology Term

Identifier Name Description
transcript