WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5j.2 Sequence Name  F49E2.5j.2
Length (nt)  4277   Chromosome Location  X: 9552839-9560800
Chromosome . Primary Identifier  X Chromosome Location . Start  9552839
Chromosome Location . End  9560800 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5j.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5j F49E2.5j 3303   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5j.2 9552839 9560800 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245850   162   X: 9552839-9553000 Caenorhabditis elegans
Exon245885   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245914   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245943   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245970   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245987   132   X: 9554692-9554823 Caenorhabditis elegans
Exon246008   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246024   162   X: 9555416-9555577 Caenorhabditis elegans
Exon246038   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246068   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246094   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246129   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246154   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246180   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246206   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246232   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246258   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246284   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246324   1006   X: 9559795-9560800 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5j.2 9552839 9560800 1

1 Sequence

Length
4277

1 Sequence Ontology Term

Identifier Name Description
transcript