WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5t.1 Sequence Name  F49E2.5t.1
Length (nt)  2937   Chromosome Location  X: 9552891-9559878
Chromosome . Primary Identifier  X Chromosome Location . Start  9552891
Chromosome Location . End  9559878 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5t.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5t F49E2.5t 2937   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5t.1 9552891 9559878 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245868   110   X: 9552891-9553000 Caenorhabditis elegans
Exon245898   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245927   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245956   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245999   132   X: 9554692-9554823 Caenorhabditis elegans
Exon246020   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246081   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246107   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246118   93   X: 9556958-9557050 Caenorhabditis elegans
Exon246141   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246167   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246193   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246219   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246245   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246271   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246297   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246308   84   X: 9559795-9559878 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5t.1 9552891 9559878 1

1 Sequence

Length
2937

1 Sequence Ontology Term

Identifier Name Description
transcript