WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199702 Gene Name  C11E4.11
Sequence Name  ? C11E4.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 and ogt-1 based on microarray and RNA-seq studies. Is affected by Cry5B based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 64
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199702

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C11E4.11 C11E4.11 64   X: 9602794-9602857
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk964260
gk962707
gk963732
gk964126
gk964352
gk964353
gk596990

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199702 9602794 9602857 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_9602858..9610186   7329 X: 9602858-9610186 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed significantly increased expression in animals fed with JM103 bacteria producing Cry5B, comparing to control animals fed with JM103. ANOVA, p-value < 0.05. WBPaper00056167:Cry5B_upregulated
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199702 9602794 9602857 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
64

1 Sequence Ontology Term