WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47A4.2.1 Sequence Name  F47A4.2.1
Length (nt)  10867   Chromosome Location  X: 9810202-9822273
Chromosome . Primary Identifier  X Chromosome Location . Start  9810202
Chromosome Location . End  9822273 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47A4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001081 dpy-22 F47A4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47A4.2 F47A4.2 10497   X: 9810469-9810562

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F47A4.2.1 9810202 9822273 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247151   361   X: 9810202-9810562 Caenorhabditis elegans
Exon247152   613   X: 9810690-9811302 Caenorhabditis elegans
Exon247153   990   X: 9811350-9812339 Caenorhabditis elegans
Exon247154   1305   X: 9812393-9813697 Caenorhabditis elegans
Exon247155   270   X: 9813764-9814033 Caenorhabditis elegans
Exon247156   306   X: 9814095-9814400 Caenorhabditis elegans
Exon247157   917   X: 9814451-9815367 Caenorhabditis elegans
Exon247158   1044   X: 9815418-9816461 Caenorhabditis elegans
Exon247159   458   X: 9816509-9816966 Caenorhabditis elegans
Exon247160   550   X: 9817044-9817593 Caenorhabditis elegans
Exon247161   1309   X: 9817644-9818952 Caenorhabditis elegans
Exon247162   100   X: 9819005-9819104 Caenorhabditis elegans
Exon247163   1582   X: 9819169-9820750 Caenorhabditis elegans
Exon247164   177   X: 9820795-9820971 Caenorhabditis elegans
Exon247165   98   X: 9821038-9821135 Caenorhabditis elegans
Exon247166   244   X: 9821181-9821424 Caenorhabditis elegans
Exon247167   224   X: 9821510-9821733 Caenorhabditis elegans
Exon247168   108   X: 9821783-9821890 Caenorhabditis elegans
Exon247169   211   X: 9822063-9822273 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F47A4.2.1 9810202 9822273 -1

1 Sequence

Length
10867

1 Sequence Ontology Term

Identifier Name Description
transcript